FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032476 through 18771 annotations produced 1 hits

(CG5439):

Annotation Number : CG5439
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032476
Gbrowse : chr2L:13177171-13178978 (+) // 100.0 //
Probeset : 1623595_at
Accessions : protein= NP_609607;, nucleotide= NM_135763;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred fr
FlyMine data for FBgn0032476.
BDGP gene expression has embryonic in situ data for CG5439: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0032476 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032476 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	98 ± 2	4 of 4	0.90	Down
Head	82 ± 4	4 of 4	0.80	Down
Eye	113 ± 4	4 of 4	1.06	None
Thoracicoabdominal ganglion	97 ± 4	4 of 4	0.90	None
Salivary gland	79 ± 2	4 of 4	0.74	Down
Crop	107 ± 3	4 of 4	1.00	None
Midgut	35 ± 4	4 of 4	0.30	Down
Tubule	49 ± 2	4 of 4	0.50	Down
Hindgut	79 ± 2	4 of 4	0.70	Down
Heart	62 ± 4	4 of 4	0.58	Down
Fat body	33 ± 5	4 of 4	0.31	Down
Ovary	258 ± 2	4 of 4	2.40	Up
Testis	73 ± 4	4 of 4	0.70	Down
Male accessory glands	40 ± 7	4 of 4	0.40	Down
Virgin spermatheca	50 ± 2	4 of 4	0.47	Down
Mated spermatheca	48 ± 3	4 of 4	0.45	Down
Adult carcass	55 ± 1	4 of 4	0.50	Down
Larval CNS	102 ± 5	4 of 4	0.95	None
Larval Salivary gland	44 ± 2	4 of 4	0.42	Down
Larval midgut	52 ± 2	4 of 4	0.49	Down
Larval tubule	86 ± 5	4 of 4	0.80	Down
Larval hindgut	85 ± 5	4 of 4	0.79	Down
Larval fat body	52 ± 3	4 of 4	0.50	Down
Larval trachea	129 ± 15	4 of 4	1.20	None
Larval carcass	73 ± 1	4 of 4	0.69	Down
S2 cells (growing)	178 ± 8	4 of 4	1.66	Up
Whole fly	107 ± 2	4 of 4

Looking for FBgn0032476. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720