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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032477 through 18771 annotations produced 1 hits

/// lethal (2) k10105 (CG5287 /// l(2)k10105):

Annotation Number : CG5287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032477
Gbrowse : chr2L:13179244-13183498 (+) // 100.0 //
Probeset : 1638344_at
Accessions : protein= NP_609608;, nucleotide= NM_135764;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0003975 // UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity // inferred from se
FlyMine data for FBgn0032477.
BDGP gene expression has embryonic in situ data for CG5287: 12 pix of staining in 2 body parts.
Homophila reports that CG5287 is a close match (6e-85) to human gene DPAGT2;DGPT (NP_976061), a gene associated with Congenital disorder of glycosylation, type Ij, 608093 (3).
VDRC has 3 RNAi stocks for FBgn0032477 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain105 14 of 4 1.50Up
Head193 74 of 4 2.70Up
Eye600 164 of 4 8.37Up
Thoracicoabdominal ganglion121 24 of 4 1.70Up
Salivary gland370 64 of 4 5.17Up
Crop77 24 of 4 1.10None
Midgut221 54 of 4 3.10Up
Tubule210 64 of 4 2.90Up
Hindgut124 34 of 4 1.70Up
Heart126 84 of 4 1.76Up
Fat body164 114 of 4 2.29Up
Ovary78 34 of 4 1.10None
Testis43 14 of 4 0.60Down
Male accessory glands288 164 of 4 4.00Up
Virgin spermatheca155 74 of 4 2.16Up
Mated spermatheca142 74 of 4 1.98Up
Adult carcass130 54 of 4 1.80Up
Larval CNS60 54 of 4 0.84None
Larval Salivary gland253 174 of 4 3.54Up
Larval midgut220 44 of 4 3.07Up
Larval tubule198 94 of 4 2.80Up
Larval hindgut117 44 of 4 1.63Up
Larval fat body137 184 of 4 1.90Up
Larval trachea72 64 of 4 1.01None
Larval carcass74 24 of 4 1.04None
S2 cells (growing)253 14 of 4 3.53Up
Whole fly71 44 of 4

Looking for FBgn0032477. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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