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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032479 through 18771 annotations produced 1 hits

kekkon-like (CG16974):

Annotation Number : CG16974
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032479
Gbrowse : chr2L:13184941-13191949 (-) // 100.0 //
Probeset : 1641047_at
Accessions : protein= NP_609610;, nucleotide= NM_135766;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0032479.
Homophila reports that CG16974 is a close match (1e-12) to human gene LRRC8;KIAA1437 (NP_062540), a gene associated with Agammaglobulinemia, non-Bruton type, 601495 (3).
VDRC has 4 RNAi stocks for FBgn0032479 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain804 214 of 4 2.90Up
Head467 54 of 4 1.70Up
Eye963 524 of 4 3.46Up
Thoracicoabdominal ganglion938 124 of 4 3.40Up
Salivary gland185 94 of 4 0.66Down
Crop219 104 of 4 0.80Down
Midgut237 54 of 4 0.90Down
Tubule181 24 of 4 0.70Down
Hindgut399 84 of 4 1.40Up
Heart434 74 of 4 1.56Up
Fat body282 224 of 4 1.02None
Ovary374 24 of 4 1.30Up
Testis69 64 of 4 0.20Down
Male accessory glands262 194 of 4 0.90None
Virgin spermatheca284 64 of 4 1.02None
Mated spermatheca213 74 of 4 0.77Down
Adult carcass242 124 of 4 0.90None
Larval CNS498 124 of 4 1.79Up
Larval Salivary gland296 114 of 4 1.07None
Larval midgut242 164 of 4 0.87None
Larval tubule398 54 of 4 1.40Up
Larval hindgut354 114 of 4 1.27Up
Larval fat body209 324 of 4 0.80None
Larval trachea296 224 of 4 1.07None
Larval carcass351 204 of 4 1.26Up
S2 cells (growing)505 144 of 4 1.82Up
Whole fly278 34 of 4

Looking for FBgn0032479. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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