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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032480 through 18771 annotations produced 1 hits



chr2L:13192205-13197281 (+) // 100.0 // (CG5682):

Annotation Number : CG5682
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630203_at
Accessions : protein= , nucleotide= NP_609611;
Pathway : 0008152 // metabolic process // inferred from electronic annotation /// 0030433 // ER-associated protein catabolic proce
Interpro : 0016020 // membrane // inferred from electronic annotation
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 ± 44 of 4 4.60Up
Head50 ± 44 of 4 2.40Up
Eye51 ± 44 of 4 2.43Up
Thoracicoabdominal ganglion91 ± 44 of 4 4.30Up
Salivary gland53 ± 54 of 4 2.52Up
Crop42 ± 14 of 4 2.00Up
Midgut100 ± 44 of 4 4.80Up
Tubule23 ± 14 of 4 1.10None
Hindgut35 ± 24 of 4 1.70Up
Heart59 ± 24 of 4 2.83Up
Fat body108 ± 64 of 4 5.13Up
Ovary8 ± 04 of 4 0.40Down
Testis6 ± 02 of 4 0.30Down
Male accessory glands29 ± 14 of 4 1.40Up
Virgin spermatheca81 ± 44 of 4 3.85Up
Mated spermatheca81 ± 14 of 4 3.86Up
Adult carcass37 ± 44 of 4 1.80Up
Larval CNS71 ± 44 of 4 3.41Up
Larval Salivary gland106 ± 34 of 4 5.06Up
Larval midgut57 ± 44 of 4 2.71Up
Larval tubule53 ± 34 of 4 2.50Up
Larval hindgut50 ± 24 of 4 2.37Up
Larval fat body68 ± 14 of 4 3.20Up
Larval trachea41 ± 44 of 4 1.97Up
Larval carcass48 ± 14 of 4 2.32Up
S2 cells (growing)86 ± 64 of 4 4.11Up
Whole fly21 ± 14 of 4

Looking for FBgn0032480. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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