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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032481 through 18771 annotations produced 1 hits


Annotation Number : CG16972
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032481
Gbrowse : chr2L:13197091-13203269 (-) // 100.0 //
Probeset : 1630207_at
Accessions : protein= NP_609612;, nucleotide= NM_135768;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032481.
BioGrid reports that CG16972 interacts with CG1865 CG5611 CG2678 CG31618 CG4193 CG4751 CG4918 CG7528 CG8280 CG8449 CG8460 CG8996 CG9250 CG9468 CG7977 .
VDRC has 3 RNAi stocks for FBgn0032481 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain152 64 of 4 0.60Down
Head57 84 of 4 0.20Down
Eye52 14 of 4 0.22Down
Thoracicoabdominal ganglion80 34 of 4 0.30Down
Salivary gland61 24 of 4 0.25Down
Crop44 24 of 4 0.20Down
Midgut42 64 of 4 0.20Down
Tubule54 04 of 4 0.20Down
Hindgut55 24 of 4 0.20Down
Heart36 24 of 4 0.15Down
Fat body47 94 of 4 0.20Down
Ovary160 54 of 4 0.70Down
Testis1882 634 of 4 7.80Up
Male accessory glands68 54 of 4 0.30Down
Virgin spermatheca46 44 of 4 0.19Down
Mated spermatheca54 44 of 4 0.23Down
Adult carcass44 44 of 4 0.20Down
Larval CNS118 114 of 4 0.49Down
Larval Salivary gland73 14 of 4 0.30Down
Larval midgut31 44 of 4 0.13Down
Larval tubule39 34 of 4 0.20Down
Larval hindgut48 14 of 4 0.20Down
Larval fat body205 954 of 4 0.90None
Larval trachea84 124 of 4 0.35Down
Larval carcass60 24 of 4 0.25Down
S2 cells (growing)91 34 of 4 0.38Down
Whole fly241 114 of 4

Looking for FBgn0032481. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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