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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032484 through 18771 annotations produced 1 hits



kekkon4 (kek4):

Annotation Number : CG9431
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032484
Gbrowse : chr2L:13212334-13215152 (-) // 100.0 //
Probeset : 1637435_at
Accessions : protein= NP_609615;, nucleotide= NM_135771;
FlyMine data for FBgn0032484.
Homophila reports that CG9431 is a close match (5e-12) to human gene KIAA1910;SLITRK1 (NP_443142), a gene associated with Tourette syndrome, 137580 (3).
VDRC has 3 RNAi stocks for FBgn0032484 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain307 ± 84 of 427.20Up
Head151 ± 74 of 413.40Up
Eye367 ± 354 of 432.54Up
Thoracicoabdominal ganglion138 ± 34 of 412.20Up
Salivary gland9 ± 40 of 4 0.82None
Crop2 ± 10 of 4 0.20Down
Midgut6 ± 00 of 4 0.50Down
Tubule5 ± 00 of 4 0.50Down
Hindgut5 ± 10 of 4 0.50Down
Heart2 ± 10 of 4 0.18Down
Fat body4 ± 40 of 4 0.43None
Ovary0 ± 00 of 4 0.10Down
Testis4 ± 00 of 4 0.40Down
Male accessory glands12 ± 20 of 4 1.10None
Virgin spermatheca11 ± 10 of 4 1.02None
Mated spermatheca6 ± 10 of 4 0.61None
Adult carcass6 ± 30 of 4 0.60None
Larval CNS84 ± 54 of 4 7.45Up
Larval Salivary gland5 ± 10 of 4 0.50None
Larval midgut9 ± 10 of 4 0.83None
Larval tubule6 ± 10 of 4 0.50None
Larval hindgut5 ± 10 of 4 0.45Down
Larval fat body11 ± 10 of 4 1.00None
Larval trachea6 ± 111 of 4 0.55None
Larval carcass5 ± 10 of 4 0.52None
S2 cells (growing)4 ± 10 of 4 0.40Down
Whole fly11 ± 11 of 4

Looking for FBgn0032484. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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