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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032485 through 18771 annotations produced 1 hits



chr2L:13216289-13219933 (-) // 100.0 // ():

Annotation Number : CG9426
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626888_at
Accessions : protein= , nucleotide= NP_609616;
Pathway : 0042994 // cytoplasmic sequestering of transcription factor // inferred from sequence or structural similarity
Interpro : 0005737 // cytoplasm // inferred from sequence or structural similarity
FlyMine data for full length.
Homophila reports that CG9426 is a close match (2e-43) to human gene GAN;GAN1 (NP_071324), a gene associated with Giant axonal neuropathy-1, 256850 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain363 84 of 4 2.80Up
Head186 64 of 4 1.40Up
Eye194 184 of 4 1.48Up
Thoracicoabdominal ganglion310 124 of 4 2.40Up
Salivary gland274 204 of 4 2.08Up
Crop178 34 of 4 1.40Up
Midgut64 44 of 4 0.50Down
Tubule164 74 of 4 1.30Up
Hindgut176 34 of 4 1.30Up
Heart149 84 of 4 1.14None
Fat body105 34 of 4 0.80None
Ovary303 54 of 4 2.30Up
Testis125 44 of 4 1.00None
Male accessory glands210 64 of 4 1.60Up
Virgin spermatheca135 44 of 4 1.03None
Mated spermatheca170 114 of 4 1.30None
Adult carcass84 84 of 4 0.60Down
Larval CNS398 254 of 4 3.03Up
Larval Salivary gland234 114 of 4 1.78Up
Larval midgut80 54 of 4 0.61Down
Larval tubule168 84 of 4 1.30None
Larval hindgut219 74 of 4 1.67Up
Larval fat body145 114 of 4 1.10None
Larval trachea182 74 of 4 1.39Up
Larval carcass161 154 of 4 1.23None
S2 cells (growing)209 104 of 4 1.59Up
Whole fly131 144 of 4

Looking for FBgn0032485. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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