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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032486 through 18771 annotations produced 1 hits



chr2L:13219987-13221401 (+) // 100.0 // ():

Annotation Number : CG5705
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637221_at
Accessions : protein= , nucleotide= NP_609617;
Pathway : 0006415 // translational termination // inferred from sequence or structural similarity /// 0006415 // translational ter
Interpro : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
FlyMine data for full length.
BioGrid reports that CG5705 interacts with CG9531 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain86 14 of 4 1.20Up
Head34 44 of 4 0.50Down
Eye25 24 of 4 0.35Down
Thoracicoabdominal ganglion79 04 of 4 1.10None
Salivary gland55 54 of 4 0.76Down
Crop41 24 of 4 0.60Down
Midgut25 24 of 4 0.30Down
Tubule47 34 of 4 0.60Down
Hindgut57 14 of 4 0.80Down
Heart26 34 of 4 0.36Down
Fat body30 34 of 4 0.41Down
Ovary153 24 of 4 2.10Up
Testis27 14 of 4 0.40Down
Male accessory glands26 34 of 4 0.40Down
Virgin spermatheca30 24 of 4 0.41Down
Mated spermatheca33 24 of 4 0.46Down
Adult carcass39 34 of 4 0.50Down
Larval CNS64 104 of 4 0.88None
Larval Salivary gland40 34 of 4 0.55Down
Larval midgut23 04 of 4 0.32Down
Larval tubule37 14 of 4 0.50Down
Larval hindgut47 34 of 4 0.64Down
Larval fat body35 34 of 4 0.50Down
Larval trachea31 24 of 4 0.43Down
Larval carcass37 24 of 4 0.51Down
S2 cells (growing)35 04 of 4 0.49Down
Whole fly73 34 of 4

Looking for FBgn0032486. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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