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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032487 through 18771 annotations produced 1 hits



Ski6 (Ski6):

Annotation Number : CG15481
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032487
Gbrowse : chr2L:13221393-13222315 (-) // 100.0 //
Probeset : 1626733_at
Accessions : protein= NP_609618;, nucleotide= NM_135774;
Pathway : 0000176 // nuclear exosome (RNase complex) // inferred from physical interaction /// 0000176 // nuclear exosome (RNase c
Interpro : 0000175 // 3'-5'-exoribonuclease activity // inferred from sequence or structural similarity /// 0000175 // 3'-5'-exorib
FlyMine data for FBgn0032487.
BioGrid reports that CG15481 interacts with CG15855 .
VDRC has 2 RNAi stocks for FBgn0032487 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 24 of 4 0.30Down
Head43 14 of 4 0.40Down
Eye49 44 of 4 0.41Down
Thoracicoabdominal ganglion37 44 of 4 0.30Down
Salivary gland74 24 of 4 0.61Down
Crop79 54 of 4 0.60Down
Midgut62 54 of 4 0.50Down
Tubule58 74 of 4 0.50Down
Hindgut53 14 of 4 0.40Down
Heart35 24 of 4 0.29Down
Fat body59 94 of 4 0.48Down
Ovary221 84 of 4 1.80Up
Testis222 144 of 4 1.80Up
Male accessory glands89 54 of 4 0.70None
Virgin spermatheca55 44 of 4 0.45Down
Mated spermatheca75 34 of 4 0.62Down
Adult carcass42 24 of 4 0.30Down
Larval CNS175 94 of 4 1.43Up
Larval Salivary gland111 104 of 4 0.91None
Larval midgut53 34 of 4 0.44Down
Larval tubule42 14 of 4 0.30Down
Larval hindgut74 64 of 4 0.61Down
Larval fat body67 124 of 4 0.60Down
Larval trachea99 84 of 4 0.81None
Larval carcass104 154 of 4 0.86None
S2 cells (growing)88 44 of 4 0.72None
Whole fly122 124 of 4

Looking for FBgn0032487. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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