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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032490 through 18771 annotations produced 1 hits



(CG16813):

Annotation Number : CG16813
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032490
Gbrowse : chr2L:13227852-13228407 (+) // 100.0 //
Probeset : 1638825_at
Accessions : protein= NP_609621;, nucleotide= NM_135777;
Interpro : 0046983 // protein dimerization activity // inferred from sequence or structural similarity
FlyMine data for FBgn0032490.
VDRC has 2 RNAi stocks for FBgn0032490 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.60None
Head2 ± 10 of 4 1.20None
Eye1 ± 10 of 4 1.04None
Thoracicoabdominal ganglion2 ± 10 of 4 1.40None
Salivary gland1 ± 00 of 4 0.64None
Crop1 ± 00 of 4 0.90None
Midgut3 ± 10 of 4 1.90None
Tubule1 ± 00 of 4 0.80None
Hindgut2 ± 00 of 4 1.20None
Heart3 ± 00 of 4 1.58None
Fat body3 ± 20 of 4 1.92None
Ovary4 ± 10 of 4 2.50None
Testis1 ± 00 of 4 1.00None
Male accessory glands2 ± 00 of 4 1.40None
Virgin spermatheca1 ± 00 of 4 1.00None
Mated spermatheca2 ± 10 of 4 1.16None
Adult carcass1 ± 00 of 4 0.60None
Larval CNS2 ± 00 of 4 1.32None
Larval Salivary gland2 ± 10 of 4 1.42None
Larval midgut5 ± 20 of 4 3.03None
Larval tubule0 ± 00 of 4 0.50None
Larval hindgut1 ± 00 of 4 0.76None
Larval fat body9 ± 10 of 4 5.00Up
Larval trachea2 ± 20 of 4 1.53None
Larval carcass2 ± 00 of 4 1.43None
S2 cells (growing)2 ± 00 of 4 1.17None
Whole fly1 ± 00 of 4

Looking for FBgn0032490. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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