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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032491 through 18771 annotations produced 1 hits



(CG16815):

Annotation Number : CG16815
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032491
Gbrowse : chr2L:13229716-13230484 (+) // 100.0 //
Probeset : 1631443_at
Accessions : protein= NP_609622;, nucleotide= NM_135778;
Interpro : 0046983 // protein dimerization activity // inferred from sequence or structural similarity
FlyMine data for FBgn0032491.
VDRC has 2 RNAi stocks for FBgn0032491 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 00 of 4 0.70None
Head12 12 of 4 1.30None
Eye7 11 of 4 0.75None
Thoracicoabdominal ganglion10 22 of 4 1.10None
Salivary gland30 52 of 4 3.18Up
Crop15 21 of 4 1.60None
Midgut21 22 of 4 2.20Up
Tubule10 10 of 4 1.10None
Hindgut11 00 of 4 1.20None
Heart5 10 of 4 0.55None
Fat body7 40 of 4 0.79None
Ovary3 10 of 4 0.40Down
Testis2 10 of 4 0.30Down
Male accessory glands35 61 of 4 3.70Up
Virgin spermatheca11 20 of 4 1.21None
Mated spermatheca11 11 of 4 1.15None
Adult carcass21 52 of 4 2.20None
Larval CNS8 22 of 4 0.85None
Larval Salivary gland7 20 of 4 0.80None
Larval midgut11 31 of 4 1.18None
Larval tubule12 22 of 4 1.30None
Larval hindgut7 01 of 4 0.79None
Larval fat body11 20 of 4 1.20None
Larval trachea2 30 of 4 0.24Down
Larval carcass9 30 of 4 0.95None
S2 cells (growing)5 20 of 4 0.53None
Whole fly9 10 of 4

Looking for FBgn0032491. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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