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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032499 through 18771 annotations produced 1 hits



UV radiation resistance associated gene (CG6116):

Annotation Number : CG6116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032499
Gbrowse : chr2L:13286789-13289561 (+) // 100.0 //
Probeset : 1631738_at
Accessions : protein= NP_609632;, nucleotide= NM_135788;
FlyMine data for FBgn0032499.
BDGP gene expression has embryonic in situ data for CG6116: 13 pix of staining in 9 body parts.
TRiP has 1 RNAi stocks for FBgn0032499 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 ± 24 of 4 1.60Up
Head80 ± 24 of 4 1.10None
Eye79 ± 34 of 4 1.05None
Thoracicoabdominal ganglion118 ± 74 of 4 1.60Up
Salivary gland196 ± 114 of 4 2.61Up
Crop87 ± 24 of 4 1.20Up
Midgut79 ± 24 of 4 1.00None
Tubule106 ± 64 of 4 1.40Up
Hindgut100 ± 34 of 4 1.30Up
Heart129 ± 84 of 4 1.72Up
Fat body80 ± 44 of 4 1.07None
Ovary107 ± 24 of 4 1.40Up
Testis60 ± 24 of 4 0.80Down
Male accessory glands64 ± 64 of 4 0.90None
Virgin spermatheca106 ± 64 of 4 1.41Up
Mated spermatheca100 ± 44 of 4 1.33Up
Adult carcass67 ± 34 of 4 0.90None
Larval CNS107 ± 24 of 4 1.42Up
Larval Salivary gland208 ± 324 of 4 2.77Up
Larval midgut127 ± 64 of 4 1.70Up
Larval tubule160 ± 74 of 4 2.10Up
Larval hindgut96 ± 44 of 4 1.28Up
Larval fat body65 ± 54 of 4 0.90None
Larval trachea82 ± 74 of 4 1.09None
Larval carcass73 ± 54 of 4 0.98None
S2 cells (growing)104 ± 24 of 4 1.39Up
Whole fly75 ± 34 of 4

Looking for FBgn0032499. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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