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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032506 through 18771 annotations produced 1 hits


Annotation Number : CG9395
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032506
Gbrowse : chr2L:13350866-13354449 (-) // 100.0 //
Probeset : 1639926_at
Accessions : protein= NP_001162973; /// NP_609639;, nucleotide= NM_001169502; /// NM_135795;
FlyMine data for FBgn0032506.
VDRC has 2 RNAi stocks for FBgn0032506 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 54 of 424.90Up
Head15 14 of 4 5.60Up
Eye2 00 of 4 0.96None
Thoracicoabdominal ganglion58 104 of 420.70Up
Salivary gland9 20 of 4 3.50None
Crop2 11 of 4 0.90None
Midgut4 00 of 4 1.40None
Tubule4 10 of 4 1.40None
Hindgut1 00 of 4 0.40None
Heart1 00 of 4 0.60None
Fat body2 10 of 4 0.90None
Ovary1 00 of 4 0.70None
Testis3 11 of 4 1.30None
Male accessory glands5 20 of 4 2.00None
Virgin spermatheca1 00 of 4 0.49None
Mated spermatheca2 00 of 4 0.97None
Adult carcass6 20 of 4 2.10None
Larval CNS22 14 of 4 8.08Up
Larval Salivary gland3 10 of 4 1.06None
Larval midgut0 00 of 4 0.31None
Larval tubule6 10 of 4 2.10None
Larval hindgut2 10 of 4 0.97None
Larval fat body4 20 of 4 1.60None
Larval trachea2 10 of 4 0.96None
Larval carcass2 10 of 4 0.98None
S2 cells (growing)1 00 of 4 0.55None
Whole fly2 00 of 4

Looking for FBgn0032506. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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