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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032507 through 18771 annotations produced 1 hits



(CG9377):

Annotation Number : CG9377
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032507
Gbrowse : chr2L:13359900-13361527 (-) // 100.0 //
Probeset : 1631512_at
Accessions : protein= NP_609640;, nucleotide= NM_135796;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0032507.
BDGP gene expression has embryonic in situ data for CG9377: 4 pix of staining in 1 body parts.
Homophila reports that CG9377 is a close match (9e-11) to human gene PLAU;URK (NP_002649), a gene associated with {Alzheimer disease, late-onset, susceptibility to}, 104300 (3).
VDRC has 2 RNAi stocks for FBgn0032507 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1191 ± 314 of 436.30Up
Head481 ± 674 of 414.70Up
Eye16 ± 33 of 4 0.49Down
Thoracicoabdominal ganglion2547 ± 1044 of 477.60Up
Salivary gland6 ± 30 of 4 0.21Down
Crop3 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule5 ± 10 of 4 0.20Down
Hindgut4 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.05Down
Fat body1 ± 00 of 4 0.04Down
Ovary1 ± 00 of 4 0.10Down
Testis3 ± 11 of 4 0.10Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.16Down
Mated spermatheca4 ± 20 of 4 0.13Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS7 ± 30 of 4 0.24Down
Larval Salivary gland7 ± 20 of 4 0.22Down
Larval midgut1 ± 00 of 4 0.05Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.04Down
Larval fat body10 ± 30 of 4 0.30Down
Larval trachea2 ± 20 of 4 0.08Down
Larval carcass2 ± 00 of 4 0.06Down
S2 cells (growing)2 ± 00 of 4 0.07Down
Whole fly32 ± 34 of 4

Looking for FBgn0032507. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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