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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032509 through 18771 annotations produced 1 hits


Annotation Number : CG6523
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032509
Gbrowse : chr2L:13366465-13367410 (+) // 100.0 //
Probeset : 1626407_at
Accessions : protein= NP_609641;, nucleotide= NM_135797;
Interpro : 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreduct
FlyMine data for FBgn0032509.
BDGP gene expression has embryonic in situ data for CG6523: 4 pix of staining in 1 body parts.
Homophila reports that CG6523 is a close match (1e-14) to human gene (NP_057501), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0032509 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain270 84 of 4 0.60Down
Head414 54 of 4 1.00None
Eye741 214 of 4 1.77Up
Thoracicoabdominal ganglion336 164 of 4 0.80Down
Salivary gland523 54 of 4 1.25Up
Crop518 174 of 4 1.20Up
Midgut524 74 of 4 1.30Up
Tubule974 294 of 4 2.30Up
Hindgut487 174 of 4 1.20Up
Heart571 204 of 4 1.37Up
Fat body645 424 of 4 1.54Up
Ovary515 84 of 4 1.20Up
Testis267 114 of 4 0.60Down
Male accessory glands455 94 of 4 1.10None
Virgin spermatheca674 244 of 4 1.61Up
Mated spermatheca598 144 of 4 1.43Up
Adult carcass424 224 of 4 1.00None
Larval CNS657 384 of 4 1.57Up
Larval Salivary gland552 154 of 4 1.32Up
Larval midgut340 44 of 4 0.81Down
Larval tubule664 114 of 4 1.60Up
Larval hindgut490 154 of 4 1.17Up
Larval fat body477 414 of 4 1.10None
Larval trachea577 154 of 4 1.38Up
Larval carcass459 114 of 4 1.10None
S2 cells (growing)586 34 of 4 1.40Up
Whole fly418 174 of 4

Looking for FBgn0032509. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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