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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032513 through 18771 annotations produced 1 hits



(CG6565):

Annotation Number : CG6565
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032513
Gbrowse : chr2L:13374178-13376178 (+) // 99.79 //
Probeset : 1637417_at
Accessions : protein= NP_609644;, nucleotide= NM_135800;
Interpro : 0008525 // phosphatidylcholine transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0032513.
BioGrid reports that CG6565 interacts with CG6866 .
VDRC has 1 RNAi stocks for FBgn0032513 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 ± 24 of 4 0.70Down
Head234 ± 114 of 4 0.80Down
Eye410 ± 264 of 4 1.46Up
Thoracicoabdominal ganglion220 ± 74 of 4 0.80Down
Salivary gland79 ± 34 of 4 0.28Down
Crop176 ± 34 of 4 0.60Down
Midgut153 ± 64 of 4 0.50Down
Tubule139 ± 44 of 4 0.50Down
Hindgut178 ± 44 of 4 0.60Down
Heart162 ± 94 of 4 0.58Down
Fat body211 ± 214 of 4 0.75Down
Ovary409 ± 84 of 4 1.50Up
Testis798 ± 224 of 4 2.80Up
Male accessory glands160 ± 54 of 4 0.60Down
Virgin spermatheca80 ± 34 of 4 0.29Down
Mated spermatheca118 ± 64 of 4 0.42Down
Adult carcass250 ± 154 of 4 0.90None
Larval CNS167 ± 64 of 4 0.59Down
Larval Salivary gland84 ± 64 of 4 0.30Down
Larval midgut99 ± 124 of 4 0.35Down
Larval tubule58 ± 24 of 4 0.20Down
Larval hindgut154 ± 144 of 4 0.55Down
Larval fat body136 ± 394 of 4 0.50Down
Larval trachea141 ± 164 of 4 0.50Down
Larval carcass181 ± 304 of 4 0.65Down
S2 cells (growing)226 ± 74 of 4 0.81Down
Whole fly281 ± 54 of 4

Looking for FBgn0032513. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime