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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032520 through 18771 annotations produced 1 hits



(CG10859):

Annotation Number : CG10859
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032520
Gbrowse : chr2L:13396388-13398664 (-) // 100.0 //
Probeset : 1631756_at
Accessions : protein= NP_609651;, nucleotide= NM_135807;
Pathway : 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005875 // microtubule asso
Interpro : "0003774 // motor activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // infer
FlyMine data for FBgn0032520.
Homophila reports that CG10859 is a close match (4e-69) to human gene (NP_075462), a gene associated with .
VDRC has 1 RNAi stocks for FBgn0032520 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 10 of 4 0.00Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland3 10 of 4 0.03Down
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule2 10 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart2 10 of 4 0.02Down
Fat body1 00 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis1580 584 of 413.70Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca2 10 of 4 0.02Down
Adult carcass6 20 of 4 0.10Down
Larval CNS3 00 of 4 0.03Down
Larval Salivary gland0 00 of 4 0.01Down
Larval midgut1 00 of 4 0.01Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.00Down
Larval fat body180 1043 of 4 1.60None
Larval trachea4 61 of 4 0.03Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)4 10 of 4 0.04Down
Whole fly115 34 of 4

Looking for FBgn0032520. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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