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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032521 through 18771 annotations produced 1 hits



(CG7110):

Annotation Number : CG7110
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032521
Gbrowse : chr2L:13398988-13411047 (+) // 100.0 //
Probeset : 1633876_at
Accessions : protein= NP_609652;, nucleotide= NM_135808;
FlyMine data for FBgn0032521.
VDRC has 2 RNAi stocks for FBgn0032521 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 24 of 4 0.40Down
Head61 ± 44 of 4 0.70Down
Eye82 ± 64 of 4 0.96None
Thoracicoabdominal ganglion38 ± 14 of 4 0.40Down
Salivary gland13 ± 31 of 4 0.16Down
Crop29 ± 24 of 4 0.30Down
Midgut12 ± 14 of 4 0.20Down
Tubule6 ± 10 of 4 0.10Down
Hindgut34 ± 14 of 4 0.40Down
Heart16 ± 34 of 4 0.19Down
Fat body17 ± 14 of 4 0.20Down
Ovary264 ± 54 of 4 3.10Up
Testis38 ± 04 of 4 0.40Down
Male accessory glands18 ± 22 of 4 0.20Down
Virgin spermatheca27 ± 34 of 4 0.32Down
Mated spermatheca31 ± 34 of 4 0.37Down
Adult carcass46 ± 24 of 4 0.50Down
Larval CNS183 ± 274 of 4 2.14Up
Larval Salivary gland6 ± 00 of 4 0.08Down
Larval midgut12 ± 23 of 4 0.15Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut22 ± 14 of 4 0.26Down
Larval fat body18 ± 04 of 4 0.20Down
Larval trachea50 ± 74 of 4 0.59Down
Larval carcass31 ± 24 of 4 0.37Down
S2 cells (growing)226 ± 34 of 4 2.64Up
Whole fly85 ± 44 of 4

Looking for FBgn0032521. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime