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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032525 through 18771 annotations produced 1 hits


Hsp60D (Hsp60D):

Annotation Number : CG16954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032525
Gbrowse : chr2L:13447537-13449497 (-) // 100.0 //
Probeset : 1633539_s_at
Accessions : protein= NP_609656; /// NP_723818;, nucleotide= NM_135812; /// NM_165043;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ele
FlyMine data for FBgn0032525.
BDGP gene expression has embryonic in situ data for CG16954: 8 pix of staining in 1 body parts.
Homophila reports that CG16954 is a close match (2e-106) to human gene HSP60;HSPD1;SPG13 (NP_955472), a gene associated with Leukodystrophy, hypomyelinating, autosomal recessive, 612233 (3);Spastic paraplegia-13, 605280 (3).
BioGrid reports that CG16954 interacts with CG2204 CG5408 .
VDRC has 1 RNAi stocks for FBgn0032525 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head4 ± 20 of 4 0.00Down
Eye3 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland10 ± 30 of 4 0.11Down
Crop3 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule6 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.00Down
Heart4 ± 00 of 4 0.05Down
Fat body10 ± 20 of 4 0.12Down
Ovary5 ± 10 of 4 0.10Down
Testis906 ± 264 of 4 9.70Up
Male accessory glands8 ± 20 of 4 0.10Down
Virgin spermatheca7 ± 10 of 4 0.08Down
Mated spermatheca6 ± 10 of 4 0.06Down
Adult carcass8 ± 10 of 4 0.10Down
Larval CNS5 ± 31 of 4 0.06Down
Larval Salivary gland7 ± 10 of 4 0.08Down
Larval midgut2 ± 10 of 4 0.02Down
Larval tubule10 ± 00 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.04Down
Larval fat body83 ± 403 of 4 0.90None
Larval trachea7 ± 42 of 4 0.08Down
Larval carcass2 ± 10 of 4 0.03Down
S2 cells (growing)4 ± 10 of 4 0.05Down
Whole fly93 ± 34 of 4

Looking for FBgn0032525. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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