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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032533 through 18771 annotations produced 1 hits


Annotation Number : CG16888
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032533
Gbrowse : chr2L:13812701-13813234 (-) // 100.0 //
Probeset : 1638220_at
Accessions : protein= NP_609678;, nucleotide= NM_135834;
FlyMine data for FBgn0032533.
BioGrid reports that CG16888 interacts with CG2033 CG32581 CG8974 .
VDRC has 2 RNAi stocks for FBgn0032533 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.10Down
Head4 00 of 4 0.20Down
Eye2 00 of 4 0.07Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland11 30 of 4 0.38Down
Crop6 20 of 4 0.20Down
Midgut8 20 of 4 0.30Down
Tubule5 00 of 4 0.20Down
Hindgut4 10 of 4 0.20Down
Heart0 00 of 4 0.02Down
Fat body1 00 of 4 0.04Down
Ovary3 10 of 4 0.10Down
Testis356 114 of 411.80Up
Male accessory glands11 20 of 4 0.40Down
Virgin spermatheca6 00 of 4 0.21Down
Mated spermatheca5 21 of 4 0.17Down
Adult carcass3 10 of 4 0.10Down
Larval CNS7 52 of 4 0.26Down
Larval Salivary gland13 23 of 4 0.45Down
Larval midgut6 22 of 4 0.20Down
Larval tubule6 11 of 4 0.20Down
Larval hindgut4 10 of 4 0.15Down
Larval fat body28 91 of 4 0.90None
Larval trachea6 10 of 4 0.22Down
Larval carcass6 20 of 4 0.22Down
S2 cells (growing)43 14 of 4 1.45Up
Whole fly30 24 of 4

Looking for FBgn0032533. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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