FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032538 through 18771 annotations produced 2 hits

(CG16885):

Annotation Number : CG16885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032538
Gbrowse : chr2L:13932789-13934691 (-) // 100.0 //
Probeset : 1638475_a_at
Accessions : protein= NP_609689; /// NP_723853;, nucleotide= NM_135845; /// NM_165071;
FlyMine data for FBgn0032538.
BDGP gene expression has embryonic in situ data for CG16885: 29 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0032538 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.20	None
Head	18 ± 2	2 of 4	1.90	None
Eye	65 ± 4	4 of 4	6.76	Up
Thoracicoabdominal ganglion	4 ± 2	0 of 4	0.50	None
Salivary gland	6 ± 1	0 of 4	0.63	None
Crop	4 ± 1	0 of 4	0.50	None
Midgut	6 ± 1	0 of 4	0.60	None
Tubule	5 ± 0	0 of 4	0.50	Down
Hindgut	2 ± 0	0 of 4	0.30	None
Heart	7 ± 1	0 of 4	0.78	None
Fat body	12 ± 4	0 of 4	1.26	None
Ovary	3 ± 1	0 of 4	0.40	None
Testis	3 ± 1	0 of 4	0.40	None
Male accessory glands	14 ± 1	0 of 4	1.50	None
Virgin spermatheca	6 ± 1	0 of 4	0.70	None
Mated spermatheca	7 ± 2	0 of 4	0.77	None
Adult carcass	22 ± 5	0 of 4	2.30	None
Larval CNS	9 ± 5	0 of 4	0.99	None
Larval Salivary gland	7 ± 2	0 of 4	0.76	None
Larval midgut	8 ± 1	0 of 4	0.87	None
Larval tubule	3 ± 0	0 of 4	0.30	None
Larval hindgut	57 ± 12	3 of 4	5.92	Up
Larval fat body	7 ± 4	0 of 4	0.70	None
Larval trachea	585 ± 267	4 of 4	60.64	Up
Larval carcass	1576 ± 318	4 of 4	163.33	Up
S2 cells (growing)	2 ± 0	0 of 4	0.24	None
Whole fly	9 ± 2	0 of 4

(CG16885):

Annotation Number : CG16885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032538
Gbrowse : chr2L:13932558-13934691 (-) // 99.11 //
Probeset : 1631302_at
Accessions : protein= NP_609689; /// NP_723853;, nucleotide= NM_135845; /// NM_165071;
FlyMine data for FBgn0032538.
BDGP gene expression has embryonic in situ data for CG16885: 29 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0032538 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 0	1 of 4	0.30	None
Head	58 ± 6	4 of 4	1.90	Up
Eye	302 ± 22	4 of 4	9.64	Up
Thoracicoabdominal ganglion	7 ± 2	0 of 4	0.20	Down
Salivary gland	19 ± 2	1 of 4	0.62	None
Crop	12 ± 1	2 of 4	0.40	None
Midgut	6 ± 1	0 of 4	0.20	Down
Tubule	6 ± 0	0 of 4	0.20	Down
Hindgut	16 ± 2	2 of 4	0.50	None
Heart	30 ± 22	2 of 4	0.98	None
Fat body	14 ± 2	0 of 4	0.45	None
Ovary	6 ± 1	0 of 4	0.20	Down
Testis	3 ± 0	0 of 4	0.10	Down
Male accessory glands	10 ± 1	0 of 4	0.30	Down
Virgin spermatheca	13 ± 1	3 of 4	0.42	None
Mated spermatheca	15 ± 3	2 of 4	0.48	None
Adult carcass	56 ± 5	4 of 4	1.80	Up
Larval CNS	22 ± 17	4 of 4	0.73	None
Larval Salivary gland	10 ± 0	1 of 4	0.34	None
Larval midgut	7 ± 2	0 of 4	0.24	Down
Larval tubule	6 ± 2	1 of 4	0.20	Down
Larval hindgut	402 ± 80	4 of 4	12.81	Up
Larval fat body	22 ± 14	1 of 4	0.70	None
Larval trachea	2882 ± 872	4 of 4	91.73	Up
Larval carcass	5246 ± 445	4 of 4	166.94	Up
S2 cells (growing)	3 ± 0	0 of 4	0.10	Down
Whole fly	31 ± 6	4 of 4

Looking for FBgn0032538. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720