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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032553 through 18771 annotations produced 1 hits



(CG4480):

Annotation Number : CG4480
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032553
Gbrowse : chr2L:14871178-14872022 (-) // 100.0 //
Probeset : 1640197_at
Accessions : protein= NP_609727;, nucleotide= NM_135883;
FlyMine data for FBgn0032553.
VDRC has 2 RNAi stocks for FBgn0032553 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 11 of 4 0.10Down
Head3 ± 21 of 4 0.10Down
Eye2 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion4 ± 21 of 4 0.10Down
Salivary gland19 ± 33 of 4 0.51Down
Crop5 ± 20 of 4 0.10Down
Midgut4 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.05Down
Fat body3 ± 20 of 4 0.10Down
Ovary2 ± 10 of 4 0.10Down
Testis533 ± 274 of 413.80Up
Male accessory glands9 ± 21 of 4 0.20Down
Virgin spermatheca4 ± 00 of 4 0.12Down
Mated spermatheca4 ± 10 of 4 0.10Down
Adult carcass7 ± 10 of 4 0.20Down
Larval CNS3 ± 11 of 4 0.09Down
Larval Salivary gland5 ± 10 of 4 0.13Down
Larval midgut3 ± 00 of 4 0.09Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut3 ± 01 of 4 0.09Down
Larval fat body50 ± 293 of 4 1.30None
Larval trachea4 ± 31 of 4 0.11Down
Larval carcass5 ± 11 of 4 0.14Down
S2 cells (growing)4 ± 01 of 4 0.11Down
Whole fly38 ± 24 of 4

Looking for FBgn0032553. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime