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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032554 through 18771 annotations produced 1 hits


Annotation Number : CG15278
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032554
Gbrowse : chr2L:14875412-14876068 (-) // 100.0 //
Probeset : 1632800_at
Accessions : protein= NP_609728;, nucleotide= NM_135884;
FlyMine data for FBgn0032554.
VDRC has 3 RNAi stocks for FBgn0032554 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye2 10 of 4 0.09Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland3 20 of 4 0.14Down
Crop0 00 of 4 0.00Down
Midgut3 10 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart2 00 of 4 0.08Down
Fat body3 21 of 4 0.11Down
Ovary1 00 of 4 0.00Down
Testis351 164 of 412.90Up
Male accessory glands6 30 of 4 0.20Down
Virgin spermatheca3 00 of 4 0.14Down
Mated spermatheca4 00 of 4 0.14Down
Adult carcass8 30 of 4 0.30Down
Larval CNS2 10 of 4 0.10Down
Larval Salivary gland3 10 of 4 0.14Down
Larval midgut6 21 of 4 0.24Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.04Down
Larval fat body27 133 of 4 1.00None
Larval trachea5 20 of 4 0.18Down
Larval carcass6 11 of 4 0.23Down
S2 cells (growing)1 00 of 4 0.05Down
Whole fly27 14 of 4

Looking for FBgn0032554. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime