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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032563 through 18771 annotations produced 1 hits



(CG15258):

Annotation Number : CG15258
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032563
Gbrowse : chr2L:15360997-15361588 (-) // 100.0 //
Probeset : 1635233_at
Accessions : protein= NP_609751;, nucleotide= NM_135907;
FlyMine data for FBgn0032563.
VDRC has 1 RNAi stocks for FBgn0032563 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head5 10 of 4 0.10Down
Eye2 00 of 4 0.06Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland3 10 of 4 0.07Down
Crop2 10 of 4 0.10Down
Midgut5 10 of 4 0.10Down
Tubule1 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart2 00 of 4 0.04Down
Fat body8 50 of 4 0.18Down
Ovary1 10 of 4 0.00Down
Testis769 154 of 416.40Up
Male accessory glands4 30 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.07Down
Mated spermatheca5 10 of 4 0.11Down
Adult carcass5 30 of 4 0.10Down
Larval CNS5 30 of 4 0.11Down
Larval Salivary gland4 10 of 4 0.09Down
Larval midgut3 10 of 4 0.08Down
Larval tubule3 00 of 4 0.10Down
Larval hindgut2 00 of 4 0.05Down
Larval fat body72 423 of 4 1.60None
Larval trachea3 31 of 4 0.07Down
Larval carcass2 00 of 4 0.05Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly47 54 of 4

Looking for FBgn0032563. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime