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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032577 through 18771 annotations produced 1 hits



(CG13244):

Annotation Number : CG13244
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032577
Gbrowse : chr2L:15916887-15917607 (+) // 100.0 //
Probeset : 1634900_at
Accessions : protein= NP_609772;, nucleotide= NM_135928;
FlyMine data for FBgn0032577.
VDRC has 3 RNAi stocks for FBgn0032577 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head7 ± 02 of 4 0.10Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland11 ± 20 of 4 0.16Down
Crop3 ± 01 of 4 0.10Down
Midgut6 ± 20 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut6 ± 11 of 4 0.10Down
Heart3 ± 10 of 4 0.04Down
Fat body5 ± 21 of 4 0.08Down
Ovary3 ± 01 of 4 0.10Down
Testis1011 ± 244 of 414.10Up
Male accessory glands7 ± 31 of 4 0.10Down
Virgin spermatheca4 ± 11 of 4 0.07Down
Mated spermatheca8 ± 11 of 4 0.11Down
Adult carcass10 ± 21 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.03Down
Larval Salivary gland4 ± 11 of 4 0.06Down
Larval midgut6 ± 00 of 4 0.09Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut5 ± 01 of 4 0.07Down
Larval fat body76 ± 384 of 4 1.10None
Larval trachea4 ± 41 of 4 0.07Down
Larval carcass5 ± 00 of 4 0.07Down
S2 cells (growing)3 ± 01 of 4 0.05Down
Whole fly71 ± 34 of 4

Looking for FBgn0032577. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime