Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032587 through 18771 annotations produced 1 hits



(CG5953):

Annotation Number : CG5953
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032587
Gbrowse : chr2L:16509119-16532877 (-) // 100.0 //
Probeset : 1637499_s_at
Accessions : protein= NP_001162989; /// NP_609796; /// NP_723976;, nucleotide= NM_001169518; /// NM_135952; /// NM_165165;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred fr
FlyMine data for FBgn0032587.
BDGP gene expression has embryonic in situ data for CG5953: 4 pix of staining in 1 body parts.
BioGrid reports that CG5953 interacts with CG5953 .
VDRC has 3 RNAi stocks for FBgn0032587 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 ± 34 of 4 0.90None
Head53 ± 44 of 4 0.80Down
Eye69 ± 64 of 4 0.98None
Thoracicoabdominal ganglion57 ± 34 of 4 0.80None
Salivary gland193 ± 84 of 4 2.74Up
Crop192 ± 134 of 4 2.70Up
Midgut75 ± 64 of 4 1.10None
Tubule218 ± 194 of 4 3.10Up
Hindgut190 ± 44 of 4 2.70Up
Heart116 ± 204 of 4 1.65None
Fat body105 ± 224 of 4 1.49Up
Ovary145 ± 74 of 4 2.10Up
Testis13 ± 14 of 4 0.20Down
Male accessory glands138 ± 124 of 4 2.00Up
Virgin spermatheca80 ± 44 of 4 1.14None
Mated spermatheca73 ± 94 of 4 1.04None
Adult carcass66 ± 14 of 4 0.90None
Larval CNS51 ± 84 of 4 0.73Down
Larval Salivary gland167 ± 254 of 4 2.36Up
Larval midgut132 ± 274 of 4 1.87None
Larval tubule308 ± 114 of 4 4.40Up
Larval hindgut156 ± 94 of 4 2.21Up
Larval fat body244 ± 264 of 4 3.50Up
Larval trachea113 ± 444 of 4 1.60None
Larval carcass167 ± 484 of 4 2.38None
S2 cells (growing)293 ± 104 of 4 4.15Up
Whole fly70 ± 44 of 4

Looking for FBgn0032587. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime