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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032588 through 18771 annotations produced 1 hits



(CG5968):

Annotation Number : CG5968
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032588
Gbrowse : chr2L:16549322-16549959 (-) // 96.19 //
Probeset : 1636777_at
Accessions : protein= NP_609797;, nucleotide= NM_135953;
FlyMine data for FBgn0032588.
BDGP gene expression has embryonic in situ data for CG5968: 2 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032588 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 0.10Down
Head5 ± 21 of 4 0.10Down
Eye4 ± 11 of 4 0.04Down
Thoracicoabdominal ganglion12 ± 13 of 4 0.10Down
Salivary gland17 ± 50 of 4 0.15Down
Crop12 ± 22 of 4 0.10Down
Midgut6 ± 20 of 4 0.10Down
Tubule9 ± 12 of 4 0.10Down
Hindgut6 ± 21 of 4 0.10Down
Heart3 ± 11 of 4 0.03Down
Fat body25 ± 124 of 4 0.23Down
Ovary3 ± 00 of 4 0.00Down
Testis1517 ± 1014 of 413.80Up
Male accessory glands11 ± 32 of 4 0.10Down
Virgin spermatheca20 ± 24 of 4 0.18Down
Mated spermatheca17 ± 53 of 4 0.16Down
Adult carcass11 ± 10 of 4 0.10Down
Larval CNS22 ± 124 of 4 0.20Down
Larval Salivary gland8 ± 20 of 4 0.07Down
Larval midgut0 ± 00 of 4 0.01Down
Larval tubule6 ± 10 of 4 0.10Down
Larval hindgut6 ± 01 of 4 0.06Down
Larval fat body135 ± 784 of 4 1.20None
Larval trachea12 ± 132 of 4 0.11Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)3 ± 10 of 4 0.03Down
Whole fly110 ± 94 of 4

Looking for FBgn0032588. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime