FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032590 through 18771 annotations produced 1 hits

(CG4631):

Annotation Number : CG4631
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032590
Gbrowse : chr2L:16607422-16609880 (+) // 100.0 //
Probeset : 1641179_at
Accessions : protein= NP_609799;, nucleotide= NM_135955;
FlyMine data for FBgn0032590.
BioGrid reports that CG4631 interacts with CG6380 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 0	3 of 4	0.10	Down
Head	2 ± 1	1 of 4	0.00	Down
Eye	1 ± 0	0 of 4	0.02	Down
Thoracicoabdominal ganglion	5 ± 0	2 of 4	0.00	Down
Salivary gland	4 ± 2	0 of 4	0.04	Down
Crop	4 ± 0	0 of 4	0.00	Down
Midgut	4 ± 1	1 of 4	0.00	Down
Tubule	4 ± 0	0 of 4	0.00	Down
Hindgut	3 ± 0	0 of 4	0.00	Down
Heart	3 ± 1	0 of 4	0.03	Down
Fat body	5 ± 5	2 of 4	0.06	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	1470 ± 77	4 of 4	14.20	Up
Male accessory glands	5 ± 1	0 of 4	0.10	Down
Virgin spermatheca	1 ± 0	0 of 4	0.02	Down
Mated spermatheca	4 ± 1	1 of 4	0.04	Down
Adult carcass	4 ± 2	1 of 4	0.00	Down
Larval CNS	4 ± 0	3 of 4	0.04	Down
Larval Salivary gland	3 ± 1	0 of 4	0.03	Down
Larval midgut	5 ± 1	2 of 4	0.05	Down
Larval tubule	4 ± 1	2 of 4	0.00	Down
Larval hindgut	1 ± 0	0 of 4	0.02	Down
Larval fat body	94 ± 60	4 of 4	0.90	None
Larval trachea	4 ± 4	1 of 4	0.04	Down
Larval carcass	4 ± 1	0 of 4	0.04	Down
S2 cells (growing)	10 ± 1	4 of 4	0.10	Down
Whole fly	103 ± 14	4 of 4

Looking for FBgn0032590. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720