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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032593 through 18771 annotations produced 1 hits



trpgamma (trpgamma):

Annotation Number : CG5996
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032593
Gbrowse : chr2L:16664860-16676666 (-) // 100.0 //
Probeset : 1626937_s_at
Accessions : protein= NP_001137830; /// NP_609802; /// NP_723983;, nucleotide= NM_001144358; /// NM_135958; /// NM_165169;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004664 // prephenate dehydratase activity // inferred from electronic annotation /// 0005216 // ion channel activity //
FlyMine data for FBgn0032593.
Homophila reports that CG5996 is a close match (1e-148) to human gene FSGS2;TRP6;TRPC6 (NP_004612), a gene associated with Glomerulosclerosis, focal segmental, 2, 603965 (3).
TRiP has 2 RNAi stocks for FBgn0032593 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032593 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.20None
Head0 00 of 4 0.30None
Eye0 00 of 4 0.21None
Thoracicoabdominal ganglion0 00 of 4 0.20None
Salivary gland1 00 of 4 0.43None
Crop33 23 of 411.10Up
Midgut1 00 of 4 0.50None
Tubule0 00 of 4 0.20Down
Hindgut0 00 of 4 0.30None
Heart0 00 of 4 0.18None
Fat body1 00 of 4 0.32None
Ovary0 00 of 4 0.30None
Testis10 10 of 4 3.40Up
Male accessory glands1 00 of 4 0.60None
Virgin spermatheca0 00 of 4 0.18None
Mated spermatheca0 00 of 4 0.22None
Adult carcass1 00 of 4 0.40None
Larval CNS0 00 of 4 0.17None
Larval Salivary gland0 00 of 4 0.24None
Larval midgut1 00 of 4 0.32None
Larval tubule0 00 of 4 0.20None
Larval hindgut0 00 of 4 0.13None
Larval fat body1 00 of 4 0.50None
Larval trachea0 00 of 4 0.14None
Larval carcass1 00 of 4 0.43None
S2 cells (growing)0 00 of 4 0.20None
Whole fly3 10 of 4

Looking for FBgn0032593. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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