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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032596 through 18771 annotations produced 1 hits



(CG17331):

Annotation Number : CG17331
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032596
Gbrowse : chr2L:16731212-16732129 (-) // 100.0 //
Probeset : 1626782_at
Accessions : protein= NP_609804;, nucleotide= NM_135960;
Pathway : 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic
Interpro : 0004175 // endopeptidase activity // inferred from sequence or structural similarity /// 0004175 // endopeptidase activi
FlyMine data for FBgn0032596.
BioGrid reports that CG17331 interacts with CG17383 CG4328 CG18255 CG2560 CG4184 .
TRiP has 1 RNAi stocks for FBgn0032596 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032596 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain380 ± 74 of 4 0.40Down
Head583 ± 94 of 4 0.60Down
Eye489 ± 204 of 4 0.50Down
Thoracicoabdominal ganglion500 ± 264 of 4 0.50Down
Salivary gland757 ± 174 of 4 0.77Down
Crop1030 ± 234 of 4 1.10None
Midgut985 ± 354 of 4 1.00None
Tubule928 ± 424 of 4 0.90None
Hindgut712 ± 264 of 4 0.70Down
Heart1982 ± 604 of 4 2.02Up
Fat body1742 ± 1744 of 4 1.78Up
Ovary1440 ± 94 of 4 1.50Up
Testis326 ± 94 of 4 0.30Down
Male accessory glands986 ± 834 of 4 1.00None
Virgin spermatheca1044 ± 414 of 4 1.06None
Mated spermatheca1060 ± 774 of 4 1.08None
Adult carcass1554 ± 264 of 4 1.60Up
Larval CNS1160 ± 514 of 4 1.18Up
Larval Salivary gland1917 ± 1384 of 4 1.96Up
Larval midgut1317 ± 1024 of 4 1.34Up
Larval tubule2371 ± 674 of 4 2.40Up
Larval hindgut1415 ± 794 of 4 1.44Up
Larval fat body1361 ± 1404 of 4 1.40None
Larval trachea1238 ± 1394 of 4 1.26Up
Larval carcass2410 ± 1984 of 4 2.46Up
S2 cells (growing)1185 ± 224 of 4 1.21Up
Whole fly980 ± 284 of 4

Looking for FBgn0032596. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime