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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032600 through 18771 annotations produced 1 hits



(CG17912):

Annotation Number : CG17912
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032600
Gbrowse : chr2L:16743403-16745565 (+) // 100.0 //
Probeset : 1636978_at
Accessions : protein= NP_001097167; /// NP_609808;, nucleotide= NM_001103697; /// NM_135964;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0032600.
BioGrid reports that CG17912 interacts with CG7440 CG7581 CG32100 .
TRiP has 1 RNAi stocks for FBgn0032600 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032600 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain142 ± 24 of 4 1.20Up
Head76 ± 44 of 4 0.70Down
Eye137 ± 74 of 4 1.21None
Thoracicoabdominal ganglion124 ± 104 of 4 1.10None
Salivary gland123 ± 74 of 4 1.09None
Crop134 ± 104 of 4 1.20None
Midgut76 ± 74 of 4 0.70Down
Tubule92 ± 44 of 4 0.80Down
Hindgut102 ± 34 of 4 0.90None
Heart125 ± 84 of 4 1.10None
Fat body109 ± 144 of 4 0.97None
Ovary249 ± 74 of 4 2.20Up
Testis42 ± 34 of 4 0.40Down
Male accessory glands100 ± 54 of 4 0.90None
Virgin spermatheca132 ± 34 of 4 1.16None
Mated spermatheca153 ± 54 of 4 1.35Up
Adult carcass73 ± 64 of 4 0.60Down
Larval CNS289 ± 394 of 4 2.55Up
Larval Salivary gland175 ± 94 of 4 1.54Up
Larval midgut76 ± 74 of 4 0.68Down
Larval tubule192 ± 114 of 4 1.70Up
Larval hindgut128 ± 64 of 4 1.13None
Larval fat body125 ± 84 of 4 1.10None
Larval trachea179 ± 154 of 4 1.58Up
Larval carcass118 ± 64 of 4 1.04None
S2 cells (growing)141 ± 24 of 4 1.25Up
Whole fly113 ± 64 of 4

Looking for FBgn0032600. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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