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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032601 through 18771 annotations produced 1 hits

yellow-b (yellow-b):

Annotation Number : CG17914
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032601
Gbrowse : chr2L:16754335-16758283 (+) // 100.0 //
Probeset : 1628927_at
Accessions : protein= NP_523586;, nucleotide= NM_078862;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032601.
BDGP gene expression has embryonic in situ data for yellow-b: 50 pix of staining in 7 body parts.
BioGrid reports that CG17914 interacts with CG7454 .
VDRC has 1 RNAi stocks for FBgn0032601 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 24 of 4 0.60Down
Head114 134 of 4 3.10Up
Eye7 11 of 4 0.21Down
Thoracicoabdominal ganglion70 54 of 4 1.90Up
Salivary gland21 20 of 4 0.58Down
Crop92 104 of 4 2.50Up
Midgut14 10 of 4 0.40Down
Tubule8 10 of 4 0.20Down
Hindgut1178 334 of 432.00Up
Heart9 11 of 4 0.26Down
Fat body16 32 of 4 0.44Down
Ovary4 10 of 4 0.10Down
Testis3 00 of 4 0.10Down
Male accessory glands13 20 of 4 0.40Down
Virgin spermatheca26 33 of 4 0.71None
Mated spermatheca32 44 of 4 0.87None
Adult carcass158 134 of 4 4.30Up
Larval CNS3 20 of 4 0.08Down
Larval Salivary gland19 32 of 4 0.52Down
Larval midgut21 32 of 4 0.57Down
Larval tubule7 10 of 4 0.20Down
Larval hindgut170 94 of 4 4.65Up
Larval fat body8 20 of 4 0.20Down
Larval trachea528 1334 of 414.36Up
Larval carcass673 1224 of 418.31Up
S2 cells (growing)17 14 of 4 0.47Down
Whole fly36 24 of 4

Looking for FBgn0032601. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime