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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032602 through 18771 annotations produced 1 hits



(CG13278):

Annotation Number : CG13278
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032602
Gbrowse : chr2L:16758349-16760138 (-) // 100.0 //
Probeset : 1636792_at
Accessions : protein= NP_609809;, nucleotide= NM_135965;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005272 // sodium channel activity // inferred from electronic annotation
FlyMine data for FBgn0032602.
VDRC has 3 RNAi stocks for FBgn0032602 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 12 of 4 0.90None
Head3 ± 11 of 4 0.60None
Eye3 ± 00 of 4 0.43Down
Thoracicoabdominal ganglion6 ± 12 of 4 0.90None
Salivary gland17 ± 72 of 4 2.44None
Crop10 ± 04 of 4 1.50Up
Midgut14 ± 14 of 4 2.10Up
Tubule8 ± 01 of 4 1.10None
Hindgut19 ± 04 of 4 2.70Up
Heart6 ± 13 of 4 0.98None
Fat body8 ± 22 of 4 1.27None
Ovary2 ± 00 of 4 0.30Down
Testis4 ± 11 of 4 0.70None
Male accessory glands9 ± 11 of 4 1.40None
Virgin spermatheca8 ± 12 of 4 1.17None
Mated spermatheca7 ± 12 of 4 0.99None
Adult carcass9 ± 30 of 4 1.30None
Larval CNS7 ± 14 of 4 1.06None
Larval Salivary gland7 ± 00 of 4 1.00None
Larval midgut15 ± 34 of 4 2.19None
Larval tubule6 ± 02 of 4 0.90None
Larval hindgut23 ± 14 of 4 3.26Up
Larval fat body10 ± 22 of 4 1.50None
Larval trachea5 ± 21 of 4 0.80None
Larval carcass13 ± 24 of 4 1.91None
S2 cells (growing)4 ± 00 of 4 0.70Down
Whole fly7 ± 01 of 4

Looking for FBgn0032602. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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