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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032603 through 18771 annotations produced 1 hits



(CG17928):

Annotation Number : CG17928
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032603
Gbrowse : chr2L:16791771-16793323 (+) // 100.0 //
Probeset : 1641108_at
Accessions : protein= NP_609810;, nucleotide= NM_135966;
Interpro : "0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred f
FlyMine data for FBgn0032603.
VDRC has 2 RNAi stocks for FBgn0032603 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 ± 34 of 4 0.60Down
Head422 ± 154 of 4 5.10Up
Eye287 ± 414 of 4 3.47Up
Thoracicoabdominal ganglion62 ± 44 of 4 0.80Down
Salivary gland137 ± 54 of 4 1.66Up
Crop11 ± 30 of 4 0.10Down
Midgut108 ± 64 of 4 1.30Up
Tubule134 ± 184 of 4 1.60Up
Hindgut39 ± 24 of 4 0.50Down
Heart285 ± 204 of 4 3.45Up
Fat body303 ± 524 of 4 3.67Up
Ovary7 ± 11 of 4 0.10Down
Testis10 ± 13 of 4 0.10Down
Male accessory glands21 ± 20 of 4 0.30Down
Virgin spermatheca276 ± 124 of 4 3.33Up
Mated spermatheca202 ± 164 of 4 2.44Up
Adult carcass576 ± 84 of 4 7.00Up
Larval CNS6 ± 12 of 4 0.07Down
Larval Salivary gland8 ± 21 of 4 0.10Down
Larval midgut73 ± 74 of 4 0.88None
Larval tubule58 ± 24 of 4 0.70Down
Larval hindgut22 ± 24 of 4 0.27Down
Larval fat body108 ± 234 of 4 1.30None
Larval trachea17 ± 34 of 4 0.21Down
Larval carcass49 ± 34 of 4 0.60Down
S2 cells (growing)9 ± 22 of 4 0.11Down
Whole fly82 ± 34 of 4

Looking for FBgn0032603. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime