FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032614 through 18771 annotations produced 1 hits

(CG13284):

Annotation Number : CG13284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032614
Gbrowse : chr2L:16843277-16848713 (-) // 100.0 //
Probeset : 1629716_a_at
Accessions : protein= NP_609816; /// NP_724022;, nucleotide= NM_135972; /// NM_165197;
Pathway : engulfment // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation //
FlyMine data for FBgn0032614.
BDGP gene expression has embryonic in situ data for CG13284: 11 pix of staining in 6 body parts.
Homophila reports that CG13284 is a close match (1e-41) to human gene EDH17B3;HSD17B3 (NP_000188), a gene associated with Pseudohermaphroditism, male, with gynecomastia, 264300 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 1	4 of 4	0.20	Down
Head	62 ± 7	4 of 4	0.50	Down
Eye	69 ± 2	4 of 4	0.60	Down
Thoracicoabdominal ganglion	35 ± 7	4 of 4	0.30	Down
Salivary gland	24 ± 4	3 of 4	0.21	Down
Crop	2123 ± 42	4 of 4	18.30	Up
Midgut	180 ± 10	4 of 4	1.60	Up
Tubule	310 ± 23	4 of 4	2.70	Up
Hindgut	216 ± 10	4 of 4	1.90	Up
Heart	1151 ± 78	4 of 4	9.90	Up
Fat body	614 ± 100	4 of 4	5.28	Up
Ovary	4 ± 1	1 of 4	0.00	Down
Testis	2 ± 1	0 of 4	0.00	Down
Male accessory glands	473 ± 14	4 of 4	4.10	Up
Virgin spermatheca	152 ± 10	4 of 4	1.31	None
Mated spermatheca	151 ± 13	4 of 4	1.30	None
Adult carcass	668 ± 33	4 of 4	5.70	Up
Larval CNS	7 ± 2	4 of 4	0.07	Down
Larval Salivary gland	71 ± 5	4 of 4	0.62	Down
Larval midgut	78 ± 14	4 of 4	0.67	None
Larval tubule	9 ± 1	2 of 4	0.10	Down
Larval hindgut	20 ± 1	4 of 4	0.18	Down
Larval fat body	11 ± 0	2 of 4	0.10	Down
Larval trachea	7 ± 2	1 of 4	0.06	Down
Larval carcass	52 ± 11	4 of 4	0.45	Down
S2 cells (growing)	6 ± 0	1 of 4	0.06	Down
Whole fly	116 ± 13	4 of 4

Looking for FBgn0032614. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720