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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032620 through 18771 annotations produced 1 hits



(CG12288):

Annotation Number : CG12288
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032620
Gbrowse : chr2L:16900534-16902189 (-) // 100.0 //
Probeset : 1624937_at
Accessions : protein= NP_609822;, nucleotide= NM_135978;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0032620.
BDGP gene expression has embryonic in situ data for CG12288: 11 pix of staining in 14 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 0.10Down
Head4 ± 01 of 4 0.00Down
Eye4 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion22 ± 14 of 4 0.10Down
Salivary gland20 ± 13 of 4 0.13Down
Crop10 ± 43 of 4 0.10Down
Midgut17 ± 14 of 4 0.10Down
Tubule11 ± 41 of 4 0.10Down
Hindgut9 ± 22 of 4 0.10Down
Heart2 ± 00 of 4 0.02Down
Fat body6 ± 51 of 4 0.04Down
Ovary450 ± 114 of 4 2.90Up
Testis18 ± 14 of 4 0.10Down
Male accessory glands27 ± 34 of 4 0.20Down
Virgin spermatheca9 ± 12 of 4 0.06Down
Mated spermatheca10 ± 23 of 4 0.07Down
Adult carcass9 ± 51 of 4 0.10Down
Larval CNS108 ± 104 of 4 0.69Down
Larval Salivary gland72 ± 14 of 4 0.46Down
Larval midgut15 ± 14 of 4 0.10Down
Larval tubule6 ± 01 of 4 0.00Down
Larval hindgut39 ± 84 of 4 0.25Down
Larval fat body17 ± 32 of 4 0.10Down
Larval trachea92 ± 204 of 4 0.60Down
Larval carcass58 ± 204 of 4 0.37Down
S2 cells (growing)128 ± 64 of 4 0.83Down
Whole fly155 ± 84 of 4

Looking for FBgn0032620. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime