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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032624 through 18771 annotations produced 1 hits


Annotation Number : CG6304
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032624
Gbrowse : chr2L:17011546-17013054 (-) // 100.0 //
Probeset : 1624007_at
Accessions : protein= NP_609826;, nucleotide= NM_135982;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032624.
BDGP gene expression has embryonic in situ data for CG6304: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0032624 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head5 11 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion5 10 of 4 0.00Down
Salivary gland11 31 of 4 0.08Down
Crop3 21 of 4 0.00Down
Midgut4 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut5 12 of 4 0.00Down
Heart1 00 of 4 0.01Down
Fat body6 10 of 4 0.05Down
Ovary1 00 of 4 0.00Down
Testis1432 214 of 4 9.90Up
Male accessory glands7 21 of 4 0.10Down
Virgin spermatheca3 01 of 4 0.03Down
Mated spermatheca7 11 of 4 0.05Down
Adult carcass6 21 of 4 0.00Down
Larval CNS2 00 of 4 0.02Down
Larval Salivary gland6 10 of 4 0.05Down
Larval midgut5 00 of 4 0.03Down
Larval tubule5 11 of 4 0.00Down
Larval hindgut5 11 of 4 0.04Down
Larval fat body217 1124 of 4 1.50None
Larval trachea10 121 of 4 0.07Down
Larval carcass6 11 of 4 0.04Down
S2 cells (growing)3 11 of 4 0.02Down
Whole fly145 154 of 4

Looking for FBgn0032624. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime