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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032629 through 18771 annotations produced 2 hits



beat-IIIc (beat-IIIc):

Annotation Number : CG15138
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032629
Gbrowse : chr2L:17189829-17260732 (-) // 98.86 //
Probeset : 1633927_a_at
Accessions : protein= NP_609830; /// NP_724042;, nucleotide= NM_135986; /// NM_165209;
Pathway : 0005576 // extracellular region // non-traceable author statement
FlyMine data for FBgn0032629.
BDGP gene expression has embryonic in situ data for beat-IIIc: 52 pix of staining in 12 body parts.
TRiP has 1 RNAi stocks for FBgn0032629 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032629 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain255 144 of 427.00Up
Head58 34 of 4 6.20Up
Eye33 14 of 4 3.52Up
Thoracicoabdominal ganglion283 44 of 429.90Up
Salivary gland7 10 of 4 0.77None
Crop48 24 of 4 5.10Up
Midgut2 00 of 4 0.30Down
Tubule0 00 of 4 0.10Down
Hindgut4 10 of 4 0.50Down
Heart4 01 of 4 0.51Down
Fat body2 10 of 4 0.24Down
Ovary4 10 of 4 0.50Down
Testis58 54 of 4 6.20Up
Male accessory glands13 22 of 4 1.40None
Virgin spermatheca1 00 of 4 0.11Down
Mated spermatheca1 00 of 4 0.20Down
Adult carcass3 10 of 4 0.40Down
Larval CNS138 84 of 414.64Up
Larval Salivary gland1 00 of 4 0.10Down
Larval midgut4 10 of 4 0.45Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut5 01 of 4 0.62Down
Larval fat body8 20 of 4 0.90None
Larval trachea2 10 of 4 0.31Down
Larval carcass7 12 of 4 0.75None
S2 cells (growing)0 00 of 4 0.04Down
Whole fly9 03 of 4



beat-IIIc (beat-IIIc):

Annotation Number : CG15138
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032629
Gbrowse : chr2L:17189809-17260732 (-) // 100.0 //
Probeset : 1625349_at
Accessions : protein= NP_609830; /// NP_724042;, nucleotide= NM_135986; /// NM_165209;
Pathway : 0005576 // extracellular region // non-traceable author statement
FlyMine data for FBgn0032629.
BDGP gene expression has embryonic in situ data for beat-IIIc: 52 pix of staining in 12 body parts.
TRiP has 1 RNAi stocks for FBgn0032629 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032629 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 94 of 413.70Up
Head31 14 of 4 5.20Up
Eye15 14 of 4 2.49Up
Thoracicoabdominal ganglion90 54 of 414.80Up
Salivary gland17 41 of 4 2.82None
Crop33 04 of 4 5.50Up
Midgut8 12 of 4 1.30None
Tubule3 00 of 4 0.60Down
Hindgut8 04 of 4 1.40None
Heart4 11 of 4 0.68None
Fat body19 113 of 4 3.23None
Ovary5 13 of 4 0.80None
Testis17 24 of 4 2.90Up
Male accessory glands6 11 of 4 1.10None
Virgin spermatheca7 14 of 4 1.30None
Mated spermatheca6 12 of 4 1.14None
Adult carcass11 22 of 4 1.80None
Larval CNS77 64 of 412.68Up
Larval Salivary gland4 10 of 4 0.75None
Larval midgut4 00 of 4 0.68None
Larval tubule4 10 of 4 0.70None
Larval hindgut9 14 of 4 1.57None
Larval fat body10 01 of 4 1.70Up
Larval trachea4 20 of 4 0.74None
Larval carcass13 14 of 4 2.25Up
S2 cells (growing)5 02 of 4 0.83None
Whole fly6 14 of 4

Looking for FBgn0032629. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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