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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032632 through 18771 annotations produced 1 hits


(CG6380):

Annotation Number : CG6380
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032632
Gbrowse : chr2L:17291169-17292207 (-) // 100.0 //
Probeset : 1624961_at
Accessions : protein= NP_609833;, nucleotide= NM_135989;
Interpro : 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from sequence or structural similarity /// 0004864
FlyMine data for FBgn0032632.
BioGrid reports that CG6380 interacts with CG7386 CG8064 CG8264 .
VDRC has 3 RNAi stocks for FBgn0032632 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland2 ± 10 of 4 0.02Down
Crop1 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body1 ± 00 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis1402 ± 174 of 4 9.20Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass4 ± 20 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut3 ± 10 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.00Down
Larval fat body154 ± 913 of 4 1.00None
Larval trachea5 ± 100 of 4 0.04Down
Larval carcass0 ± 00 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly152 ± 84 of 4

Looking for FBgn0032632. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime