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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032632 through 18771 annotations produced 1 hits



(CG6380):

Annotation Number : CG6380
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032632
Gbrowse : chr2L:17291169-17292207 (-) // 100.0 //
Probeset : 1624961_at
Accessions : protein= NP_609833;, nucleotide= NM_135989;
Interpro : 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from sequence or structural similarity /// 0004864
FlyMine data for FBgn0032632.
BioGrid reports that CG6380 interacts with CG7386 CG8064 CG8264 .
VDRC has 3 RNAi stocks for FBgn0032632 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye1 10 of 4 0.01Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland2 10 of 4 0.02Down
Crop1 00 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart0 00 of 4 0.00Down
Fat body1 00 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis1402 174 of 4 9.20Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass4 20 of 4 0.00Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut3 10 of 4 0.02Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.00Down
Larval fat body154 913 of 4 1.00None
Larval trachea5 100 of 4 0.04Down
Larval carcass0 00 of 4 0.00Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly152 84 of 4

Looking for FBgn0032632. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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