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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032634 through 18771 annotations produced 1 hits



chr2L:17409695-17410368 (-) // 100.0 // (Rpb11):

Annotation Number : CG6840
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638576_at
Accessions : protein= , nucleotide= NP_609836;
Pathway : 0006350 // transcription // non-traceable author statement /// 0006350 // transcription // inferred from electronic anno
Interpro : "0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation ///
FlyMine data for full length.
BioGrid reports that CG6840 interacts with CG7885 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain279 94 of 4 1.10Up
Head181 64 of 4 0.70Down
Eye347 204 of 4 1.42Up
Thoracicoabdominal ganglion286 124 of 4 1.20None
Salivary gland181 54 of 4 0.74Down
Crop223 134 of 4 0.90None
Midgut120 34 of 4 0.50Down
Tubule105 24 of 4 0.40Down
Hindgut137 54 of 4 0.60Down
Heart142 54 of 4 0.58Down
Fat body93 74 of 4 0.38Down
Ovary432 34 of 4 1.80Up
Testis142 14 of 4 0.60Down
Male accessory glands183 114 of 4 0.80Down
Virgin spermatheca71 34 of 4 0.29Down
Mated spermatheca98 84 of 4 0.40Down
Adult carcass114 84 of 4 0.50Down
Larval CNS570 154 of 4 2.34Up
Larval Salivary gland287 114 of 4 1.18None
Larval midgut98 44 of 4 0.40Down
Larval tubule180 94 of 4 0.70Down
Larval hindgut190 74 of 4 0.78Down
Larval fat body210 64 of 4 0.90None
Larval trachea414 344 of 4 1.70Up
Larval carcass211 74 of 4 0.87None
S2 cells (growing)832 134 of 4 3.41Up
Whole fly244 154 of 4

Looking for FBgn0032634. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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