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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032637 through 18771 annotations produced 1 hits



(CG5050):

Annotation Number : CG5050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032637
Gbrowse : chr2L:17452923-17458769 (+) // 99.6 //
Probeset : 1640348_at
Accessions : protein= NP_609839;, nucleotide= NM_135995;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032637.
BioGrid reports that CG5050 interacts with CG5380 CG6757 CG5062 CG5468 CG6030 CG8669 CG8854 .
VDRC has 3 RNAi stocks for FBgn0032637 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 01 of 4 0.00Down
Head8 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion17 ± 20 of 4 0.10Down
Salivary gland13 ± 60 of 4 0.05Down
Crop9 ± 10 of 4 0.00Down
Midgut4 ± 10 of 4 0.00Down
Tubule6 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart4 ± 10 of 4 0.02Down
Fat body7 ± 30 of 4 0.03Down
Ovary4 ± 11 of 4 0.00Down
Testis1886 ± 514 of 4 7.30Up
Male accessory glands8 ± 20 of 4 0.00Down
Virgin spermatheca5 ± 00 of 4 0.02Down
Mated spermatheca3 ± 10 of 4 0.01Down
Adult carcass10 ± 50 of 4 0.00Down
Larval CNS7 ± 01 of 4 0.03Down
Larval Salivary gland6 ± 10 of 4 0.02Down
Larval midgut7 ± 20 of 4 0.03Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.01Down
Larval fat body363 ± 1634 of 4 1.40None
Larval trachea13 ± 94 of 4 0.05Down
Larval carcass5 ± 20 of 4 0.02Down
S2 cells (growing)28 ± 14 of 4 0.11Down
Whole fly257 ± 154 of 4

Looking for FBgn0032637. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime