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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032642 through 18771 annotations produced 1 hits



(CG5110):

Annotation Number : CG5110
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032642
Gbrowse : chr2L:17481245-17481855 (+) // 100.0 //
Probeset : 1641124_at
Accessions : protein= NP_609843;, nucleotide= NM_135999;
Pathway : 0005626 // insoluble fraction // inferred from direct assay
Interpro : 0005070 // SH3/SH2 adaptor activity // inferred from sequence or structural similarity /// 0005515 // protein binding //
FlyMine data for FBgn0032642.
BioGrid reports that CG5110 interacts with CG5189 .
VDRC has 2 RNAi stocks for FBgn0032642 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain322 14 of 4 1.60Up
Head336 24 of 4 1.70Up
Eye510 194 of 4 2.51Up
Thoracicoabdominal ganglion280 24 of 4 1.40Up
Salivary gland564 174 of 4 2.78Up
Crop411 104 of 4 2.00Up
Midgut327 74 of 4 1.60Up
Tubule260 94 of 4 1.30Up
Hindgut371 64 of 4 1.80Up
Heart470 104 of 4 2.32Up
Fat body384 304 of 4 1.89Up
Ovary290 44 of 4 1.40Up
Testis90 14 of 4 0.40Down
Male accessory glands542 334 of 4 2.70Up
Virgin spermatheca309 124 of 4 1.52Up
Mated spermatheca281 84 of 4 1.39Up
Adult carcass282 114 of 4 1.40Up
Larval CNS326 164 of 4 1.61Up
Larval Salivary gland529 184 of 4 2.61Up
Larval midgut360 84 of 4 1.77Up
Larval tubule642 144 of 4 3.20Up
Larval hindgut315 124 of 4 1.55Up
Larval fat body776 824 of 4 3.80Up
Larval trachea342 194 of 4 1.69Up
Larval carcass275 154 of 4 1.36Up
S2 cells (growing)370 134 of 4 1.82Up
Whole fly203 84 of 4

Looking for FBgn0032642. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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