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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032643 through 18771 annotations produced 1 hits



(CG6453):

Annotation Number : CG6453
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032643
Gbrowse : chr2L:17481987-17484302 (-) // 100.0 //
Probeset : 1625519_at
Accessions : protein= NP_609844;, nucleotide= NM_136000;
Pathway : 0017177 // alpha-glucosidase II complex // inferred from sequence or structural similarity
Interpro : "0004558 // alpha-glucosidase activity // inferred from sequence or structural similarity /// 0004558 // alpha-glucosida
FlyMine data for FBgn0032643.
Homophila reports that CG6453 is a close match (1e-67) to human gene G19P1;PCLD;PRKCSH (NP_002734), a gene associated with Polycystic liver disease, 174050 (3).
TRiP has 1 RNAi stocks for FBgn0032643 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain129 ± 44 of 4 0.50Down
Head184 ± 84 of 4 0.60Down
Eye181 ± 64 of 4 0.63Down
Thoracicoabdominal ganglion126 ± 44 of 4 0.40Down
Salivary gland742 ± 444 of 4 2.59Up
Crop238 ± 74 of 4 0.80Down
Midgut374 ± 54 of 4 1.30Up
Tubule384 ± 114 of 4 1.30Up
Hindgut254 ± 44 of 4 0.90Down
Heart327 ± 64 of 4 1.14Up
Fat body275 ± 274 of 4 0.96None
Ovary363 ± 14 of 4 1.30Up
Testis75 ± 14 of 4 0.30Down
Male accessory glands911 ± 224 of 4 3.20Up
Virgin spermatheca444 ± 134 of 4 1.55Up
Mated spermatheca453 ± 374 of 4 1.58Up
Adult carcass168 ± 74 of 4 0.60Down
Larval CNS448 ± 214 of 4 1.56Up
Larval Salivary gland1960 ± 544 of 4 6.83Up
Larval midgut361 ± 124 of 4 1.26Up
Larval tubule634 ± 114 of 4 2.20Up
Larval hindgut390 ± 124 of 4 1.36Up
Larval fat body183 ± 144 of 4 0.60Down
Larval trachea697 ± 1174 of 4 2.43Up
Larval carcass365 ± 204 of 4 1.27Up
S2 cells (growing)798 ± 184 of 4 2.78Up
Whole fly286 ± 104 of 4

Looking for FBgn0032643. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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