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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032644 through 18771 annotations produced 1 hits


Annotation Number : CG5131
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032644
Gbrowse : chr2L:17484517-17485624 (+) // 100.0 //
Probeset : 1638410_at
Accessions : protein= NP_609845;, nucleotide= NM_136001;
Interpro : 0017170 // KU70 binding // inferred from sequence or structural similarity
FlyMine data for FBgn0032644.
BDGP gene expression has embryonic in situ data for CG5131: 6 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032644 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain116 24 of 4 0.80Down
Head88 24 of 4 0.60Down
Eye77 14 of 4 0.51Down
Thoracicoabdominal ganglion136 44 of 4 0.90None
Salivary gland121 14 of 4 0.81Down
Crop115 44 of 4 0.80Down
Midgut91 24 of 4 0.60Down
Tubule90 44 of 4 0.60Down
Hindgut123 14 of 4 0.80Down
Heart123 74 of 4 0.82Down
Fat body121 44 of 4 0.81Down
Ovary242 24 of 4 1.60Up
Testis34 24 of 4 0.20Down
Male accessory glands96 34 of 4 0.60Down
Virgin spermatheca126 54 of 4 0.84Down
Mated spermatheca121 64 of 4 0.80Down
Adult carcass106 74 of 4 0.70Down
Larval CNS125 134 of 4 0.83Down
Larval Salivary gland87 64 of 4 0.58Down
Larval midgut76 54 of 4 0.51Down
Larval tubule88 34 of 4 0.60Down
Larval hindgut111 94 of 4 0.74Down
Larval fat body71 34 of 4 0.50Down
Larval trachea95 64 of 4 0.63Down
Larval carcass103 114 of 4 0.69Down
S2 cells (growing)71 24 of 4 0.48Down
Whole fly151 64 of 4

Looking for FBgn0032644. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime