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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032646 through 18771 annotations produced 1 hits



(CG6412):

Annotation Number : CG6412
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032646
Gbrowse : chr2L:17499263-17501109 (-) // 100.0 //
Probeset : 1627749_at
Accessions : protein= NP_609847;, nucleotide= NM_136003;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence o
Interpro : 0003746 // translation elongation factor activity // inferred from sequence or structural similarity /// 0003746 // tran
FlyMine data for FBgn0032646.
BDGP gene expression has embryonic in situ data for CG6412: 13 pix of staining in 9 body parts.
Homophila reports that CG6412 is a close match (2e-42) to human gene COXPD3;TSFM (NP_005717), a gene associated with Combined oxidative phosphorylation deficiency 3, 610505 (3).
BioGrid reports that CG6412 interacts with CG6822 CG8173 CG6831 .
TRiP has 1 RNAi stocks for FBgn0032646 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032646 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain303 ± 54 of 4 1.10Up
Head184 ± 14 of 4 0.60Down
Eye189 ± 44 of 4 0.67Down
Thoracicoabdominal ganglion359 ± 84 of 4 1.30Up
Salivary gland125 ± 84 of 4 0.44Down
Crop135 ± 24 of 4 0.50Down
Midgut115 ± 34 of 4 0.40Down
Tubule203 ± 84 of 4 0.70Down
Hindgut192 ± 34 of 4 0.70Down
Heart152 ± 34 of 4 0.53Down
Fat body153 ± 144 of 4 0.54Down
Ovary267 ± 54 of 4 0.90None
Testis1318 ± 124 of 4 4.60Up
Male accessory glands108 ± 34 of 4 0.40Down
Virgin spermatheca249 ± 74 of 4 0.88Down
Mated spermatheca262 ± 84 of 4 0.92None
Adult carcass147 ± 84 of 4 0.50Down
Larval CNS245 ± 104 of 4 0.86Down
Larval Salivary gland106 ± 74 of 4 0.37Down
Larval midgut95 ± 64 of 4 0.33Down
Larval tubule99 ± 54 of 4 0.40Down
Larval hindgut174 ± 164 of 4 0.61Down
Larval fat body179 ± 474 of 4 0.60None
Larval trachea113 ± 264 of 4 0.40Down
Larval carcass141 ± 174 of 4 0.50Down
S2 cells (growing)218 ± 44 of 4 0.77Down
Whole fly285 ± 64 of 4

Looking for FBgn0032646. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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