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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032648 through 18771 annotations produced 1 hits


(CG15144):

Annotation Number : CG15144
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032648
Gbrowse : chr2L:17525702-17528995 (-) // 100.0 //
Probeset : 1633457_at
Accessions : protein= NP_609849;, nucleotide= NM_136005;
FlyMine data for FBgn0032648.
VDRC has 2 RNAi stocks for FBgn0032648 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.22Down
Crop1 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.10Down
Hindgut0 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.05Down
Fat body2 ± 10 of 4 0.09Down
Ovary0 ± 00 of 4 0.00Down
Testis334 ± 74 of 413.50Up
Male accessory glands4 ± 10 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.13Down
Mated spermatheca6 ± 20 of 4 0.26Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.05Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut0 ± 00 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.12Down
Larval fat body42 ± 202 of 4 1.70None
Larval trachea3 ± 50 of 4 0.12Down
Larval carcass0 ± 00 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly24 ± 14 of 4

Looking for FBgn0032648. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime