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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032654 through 18771 annotations produced 1 hits



(CG15147):

Annotation Number : CG15147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032654
Gbrowse : chr2L:17625746-17626345 (-) // 100.0 //
Probeset : 1640269_at
Accessions : protein= NP_609854;, nucleotide= NM_136010;
FlyMine data for FBgn0032654.
VDRC has 2 RNAi stocks for FBgn0032654 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head2 00 of 4 0.00Down
Eye5 10 of 4 0.11Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland12 20 of 4 0.24Down
Crop7 10 of 4 0.10Down
Midgut2 00 of 4 0.00Down
Tubule2 00 of 4 0.10Down
Hindgut4 10 of 4 0.10Down
Heart5 10 of 4 0.10Down
Fat body2 00 of 4 0.05Down
Ovary2 00 of 4 0.00Down
Testis858 344 of 416.60Up
Male accessory glands13 10 of 4 0.30Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca2 10 of 4 0.06Down
Adult carcass3 00 of 4 0.10Down
Larval CNS3 20 of 4 0.06Down
Larval Salivary gland8 12 of 4 0.16Down
Larval midgut1 00 of 4 0.03Down
Larval tubule3 00 of 4 0.10Down
Larval hindgut4 20 of 4 0.08Down
Larval fat body35 132 of 4 0.70None
Larval trachea4 51 of 4 0.08Down
Larval carcass2 00 of 4 0.05Down
S2 cells (growing)2 00 of 4 0.05Down
Whole fly51 44 of 4

Looking for FBgn0032654. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime