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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032656 through 18771 annotations produced 1 hits



(CG5674):

Annotation Number : CG5674
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032656
Gbrowse : chr2L:17963337-17974870 (+) // 100.0 //
Probeset : 1630550_a_at
Accessions : protein= NP_609856; /// NP_724077; /// NP_724079;, nucleotide= NM_136012; /// NM_165232; /// NM_165233;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032656.
BDGP gene expression has embryonic in situ data for CG5674: 4 pix of staining in 1 body parts.
BioGrid reports that CG5674 interacts with CG7867 CG6276 CG6819 CG8580 CG8854 CG9036 CG9083 CG9653 .
VDRC has 4 RNAi stocks for FBgn0032656 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain398 ± 74 of 4 4.00Up
Head110 ± 54 of 4 1.10None
Eye95 ± 14 of 4 0.96None
Thoracicoabdominal ganglion407 ± 94 of 4 4.10Up
Salivary gland95 ± 84 of 4 0.96None
Crop123 ± 104 of 4 1.20None
Midgut81 ± 54 of 4 0.80None
Tubule85 ± 34 of 4 0.90Down
Hindgut94 ± 44 of 4 0.90None
Heart53 ± 24 of 4 0.54Down
Fat body66 ± 44 of 4 0.67Down
Ovary242 ± 64 of 4 2.40Up
Testis39 ± 04 of 4 0.40Down
Male accessory glands148 ± 64 of 4 1.50Up
Virgin spermatheca133 ± 64 of 4 1.34Up
Mated spermatheca118 ± 74 of 4 1.19None
Adult carcass59 ± 64 of 4 0.60Down
Larval CNS240 ± 144 of 4 2.42Up
Larval Salivary gland93 ± 64 of 4 0.94None
Larval midgut82 ± 44 of 4 0.83None
Larval tubule176 ± 114 of 4 1.80Up
Larval hindgut120 ± 24 of 4 1.21Up
Larval fat body166 ± 44 of 4 1.70Up
Larval trachea239 ± 24 of 4 2.40Up
Larval carcass153 ± 124 of 4 1.54Up
S2 cells (growing)180 ± 34 of 4 1.82Up
Whole fly99 ± 64 of 4

Looking for FBgn0032656. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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