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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032658 through 18771 annotations produced 1 hits


Annotation Number : CG5681
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032658
Gbrowse : chr2L:17986527-17988218 (+) // 100.0 //
Probeset : 1627307_at
Accessions : protein= NP_609858;, nucleotide= NM_136014;
FlyMine data for FBgn0032658.
BioGrid reports that CG5681 interacts with CG7834 .
VDRC has 2 RNAi stocks for FBgn0032658 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.20Down
Head2 10 of 4 0.20Down
Eye4 12 of 4 0.30Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland6 11 of 4 0.51Down
Crop6 11 of 4 0.50Down
Midgut2 10 of 4 0.20Down
Tubule4 00 of 4 0.30Down
Hindgut3 10 of 4 0.20Down
Heart0 00 of 4 0.04Down
Fat body19 44 of 4 1.43None
Ovary0 00 of 4 0.00Down
Testis270 124 of 420.30Up
Male accessory glands13 22 of 4 1.00None
Virgin spermatheca8 13 of 4 0.65Down
Mated spermatheca7 12 of 4 0.58Down
Adult carcass2 10 of 4 0.20Down
Larval CNS4 23 of 4 0.36Down
Larval Salivary gland4 00 of 4 0.36Down
Larval midgut3 10 of 4 0.29Down
Larval tubule4 12 of 4 0.30Down
Larval hindgut2 01 of 4 0.17Down
Larval fat body58 283 of 4 4.40None
Larval trachea5 12 of 4 0.44Down
Larval carcass0 00 of 4 0.03Down
S2 cells (growing)1 00 of 4 0.11Down
Whole fly13 14 of 4

Looking for FBgn0032658. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime