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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032660 through 18771 annotations produced 1 hits



elfless (elfless):

Annotation Number : CG15150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032660
Gbrowse : chr2L:18009909-18011209 (-) // 100.0 //
Probeset : 1623844_at
Accessions : protein= NP_001163003; /// NP_609860;, nucleotide= NM_001169532; /// NM_136016;
Pathway : 0005634 // nucleus // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0032660.
BDGP gene expression has embryonic in situ data for CG15150: 2 pix of staining in 1 body parts.
BioGrid reports that CG15150 interacts with CG18476 CG7424 CG17127 CG2960 CG3922 CG4264 CG4756 CG4759 CG5271 CG5478 CG5677 CG6611 CG7425 CG7757 CG8989 CG9609 CG17757 .
VDRC has 3 RNAi stocks for FBgn0032660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.20Down
Head2 00 of 4 0.10Down
Eye5 21 of 4 0.32Down
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland6 10 of 4 0.36Down
Crop2 10 of 4 0.20Down
Midgut4 10 of 4 0.20Down
Tubule3 00 of 4 0.20Down
Hindgut2 00 of 4 0.10Down
Heart3 10 of 4 0.21Down
Fat body3 50 of 4 0.20Down
Ovary2 10 of 4 0.20Down
Testis207 54 of 412.30Up
Male accessory glands0 00 of 4 0.00Down
Virgin spermatheca3 10 of 4 0.20Down
Mated spermatheca3 10 of 4 0.18Down
Adult carcass1 00 of 4 0.10Down
Larval CNS3 10 of 4 0.21Down
Larval Salivary gland4 10 of 4 0.27Down
Larval midgut9 40 of 4 0.55None
Larval tubule3 10 of 4 0.20Down
Larval hindgut1 00 of 4 0.09Down
Larval fat body34 173 of 4 2.10None
Larval trachea5 00 of 4 0.31Down
Larval carcass3 10 of 4 0.21Down
S2 cells (growing)2 10 of 4 0.17Down
Whole fly16 14 of 4

Looking for FBgn0032660. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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